mlin

wdldoc

Create WDL documentation using Markdown.

warp

WDL Analysis Research Pipelines

shasta-docker

[DEPRECATED] This repository contains the code and configuration required to create Docker images for Shasta on different platforms.

htcat

Parallel and Pipelined HTTP GET Utility

parliament2

Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data

hpp-assembly

app-openpgp

OpenPGP Card Application

zenodo-upload

upload big files to Zenodo using cURL, jq and bash

minGPT

A minimal PyTorch re-implementation of the OpenAI GPT (Generative Pretrained Transformer) training

efs-utils

Utilities for Amazon Elastic File System (EFS)

chia-blockchain

Chia blockchain python implementation (full node, farmer, harvester, timelord, and wallet)

athena-sqlite

A SQLite driver for S3 and Amazon Athena 😳

enable-cryptocurrency-in-funding-yml

Star this repo and send an email to opensource@github.com if you'd like to see cryptocurrencies added as official options to the FUNDING.yml file for GitHub Sponsors

sphinx-tabs

Tabbed views for Sphinx

markdown-fenced-code-tabs

Generates tabs for consecutive markdown code blocks

bedtk

A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)

holy-build-box

System for building cross-distribution Linux binaries

manylinux

Python wheels that work on any linux (almost)

python-manylinux-demo

Demo project for building Python wheels for Linux with Travis-CI

sqlite

Official Git mirror of the SQLite source tree

amazon-ecr-credential-helper

Automatically gets credentials for Amazon ECR on docker push/docker pull

hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

miniwdl-plugins

MiniWDL plugins

pure-bash-bible

📖 A collection of pure bash alternatives to external processes.

idseq-workflows

Portable WDL workflows for IDseq production pipelines

capnproto

Cap'n Proto serialization/RPC system - core tools and C++ library

fcmm

Fast Concurrent Memoization Map (fcmm) is an almost lock-free concurrent hashmap written in C++11 to be used for memoization in concurrent environments.

riegeli

Riegeli/records is a file format for storing a sequence of string records, typically serialized protocol buffers.

sqlite

Unofficial git mirror of SQLite sources (see link for build instructions)

TPCH-sqlite

SQLite TPCH database