mlandis

phylowood

Browser-based Interactive Phylogeographic Animations

creepy-jerk

Phylogenetic method to model continuous trait evolution as a Lévy process.

biogeo_dating

Biogeographic dating of speciation times using paleogeographically informed processes

phyddle

Phylogenetic model exploration with deep learning

biome_shift

Data and code for "Modeling phylogenetic biome shifts on a planet with a past"

bayarea

Bayesian inference of historical biogeography for many discrete areas

biogeo_silversword

Data and scripts for "Dating the Hawaiian silversword radiation" project

fig_model

vib_div

Data files and RevBayes code for "Joint phylogenetic estimation of geographic movements and biome shifts during the global diversification of Viburnum"

graphical_model_magnets

DIY Graphical Model Magnets

bayarea-fig

Plots maps and ranges onto phylogeny.

biol_4220

Practical Bioinformatics @ WUSTL

git-coal

hawaiiDivDynamics

jupyter_case_studies

Inference case studies in jupyter

mlandis.github.io

mxra8_bovinae

Supplementary files for Kim et al. (2019)

origamino

Phylogenetic method specialized to consider protein tertiary structure

phylodeep

posselreg

Phylogenetic method for single-codon-site rate variation.

pytbeaglehon

python wrapper around beagle-lib library for calculation of likelihoods on phylogenetic trees

reading-grp-bib

LaTeX bibliographies from reading groups I've run. Hopefully of use to someone else.

revbayes_bash_scripts

RevBayes bash scripts

revbayes_fossils

revbayes_kernel

A Jupyter kernel for RevBayes

RevTests

rtd-test

ssb2017.github.io

Webpage for the 2017 SSB standalone meeting in Baton Rouge, LA