Mukai Wang's repositories
ADAPT_example
The source codes for the simulation studies and real data examples of ADAPT (Analysis of Microbiome Differential Abudance by Pooling Tobit Models).
ENAR-DataFest
DataFest 2024
ANCOM-BC-Code-Archive
Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction"
ANCOM-Code-Archive
R functions for Analysis of Composition of Microbiomes (ANCOM).
BIOSTAT682-final-project
This repository contains part of the code and training/test data that can illustrate how the Bayesian analysis was done for this project
BIOSTAT830
Infectious Disease Modeling Fall 2022
blockmodels
:exclamation: This is a read-only mirror of the CRAN R package repository. blockmodels — Latent and Stochastic Block Model Estimation by a 'V-EM' Algorithm
cardioStatsUSA
R Shiny application for exploring 20 years of blood pressure data from NHANES
CyTOF-process
Automated Workflow for processing CyTOF data
DTHC
Diffusion Tree Hierarchical Clustering
EEB466
Code for homework of EEB466 at U of Michigan Fall 2021.
EvolutionInSilico_Current
Winter 2021 Evolution in silico class!
FingerpaintingFitnessLandscapes.js
Finger Painting Fitness Landscapes, but on the web
KVS-CoDa
Source code of the variable selection for compositional data paper (ICML 2023)
LOCOM
A logistic regression model for testing differential abundance in compositional microbiome data
pomp
R package for statistical inference using partially observed Markov processes
Rphenograph
Rphenograph: R implementation of the PhenoGraph algorithm
scVI
Deep generative modeling for single-cell omics data
SIMPLI
SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
STATCOM-SPH-Marketing
Code Snippets for analyzing the survey results about the feedback to SPH websites.
varselect
A package that carries out forward/backward variable selection for linear regression.
Vascular-eQTL
Code Repository of eQTL Studies carried out under instructions of Dr. Santhi Ganesh and Dr. Xiang Zhou.