Michio Katouda's repositories
molcrystop
Python script easy to make force field topology of molecular crystals
gromacs_amber14sb_bugfix
Bugfix of amber14sb force field of gromacs
meekovina
python script easy to use Autodock Vina basic docking simulation
pdbqtprep
Integrated program of PDBFixer and AutoDockTools to prepare protein model of molecular dynamics simulation and AutoDock Vina docking simulation.
placingmd
Protein-Ligand Attached Complex Input Generator for Molecular Dynamics
qclsample
Sample codes of quantum machine learning
ChemTSv2
Refined and extended version of ChemTS
colabsamples_jp
Sample notebooks of Google Colaboratory (in Japanese)
conf_clustering
clustering analysis tool of molecular conformations
csp_pyxtal_dftb
Crytal structure prediction using PyXtal and DFTB+
DockStream
DockStream: A Docking Wrapper to Enhance De Novo Molecular Design
GraphINVENT
Graph neural networks for molecular design.
gromacs_build_scripts
gromacs build scripts
mlsample
Machine learning samples
nequip
NequIP is a code for building E(3)-equivariant interatomic potentials
pdbfixer
PDBFixer fixes problems in PDB files
Placevent3
Python 3 translation of Placevent - 3D-RISM-based solvent and ion placement software
pystrainfilter
python interface of StrainFilter
python_packaging_example
An example of python-packaging
quantum-native-dojo
量子コンピュータ初学者のための自習教材
TTMD
Python code to run Thermal Titration Molecular Dynamics (TTMD) simulations