mjmiossec

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University of Oxford @CGGOxford

Oxford

https://www.well.ox.ac.uk/people/matthieu-miossec

Matthieu Joseph Miossec's repositories

omniscope

Finding additional species in reference-based assembly data using sequence homology, read depth and directed de novo assembly.

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PDFsplit

Very specific use-case: splits a PDF into each one of its pages. Helpful if each page is really meant to be its own document.

Language:Python100

BAMily

Simple variant caller for the identification of variants present in a subset of individuals and absent in another.

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BasicNeuralNetwork

Making a basic neural network in Python 3, building it up as I go along

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BioinfinvRepro

Curso de introducción a la bioinformática e investigación reproducible

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excelerate-scRNAseq

Single RNA-seq data analysis with R (Finland, May, 2019)

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gemini

a lightweight db framework for exploring genetic variation.

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GeneFEAST

GeneFEAST is a gene-centric functional enrichment analysis summarisation and visualisation tool implemented in Python.

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genomics

A collection of scripts and notes related to genomics and bioinformatics

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kaggle-notebooks

Github repository for all my Python Kaggle notebooks up to date.

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learntoRfromNothing

Learn to code in R from just your laptop and wifi with QNNDukeNguyen

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mailtopdf-crawler-with-AutoHotKey

Very specific use-case: From open Outlook app on Windows, crawls through each email and prints it to pdf with unique number (this is for a version of Outlook that prevents you from saving emails en masse, e.g. university email). It mostly works.

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pathoscope2biom

an script for convert pathoscope2 output in biom format

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Temp

For any data that does not yet have a home.

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UpSetPlot

Draw UpSet plots with Matplotlib

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