mjisan / HBL_Parallel_Processing

A parallel processing method based on Dask for processing URI Hurricane Boundary Layer Model's Wind outputs .

HBL_Parallel_Processing

A parallel processing program based on Dask for processing URI Hurricane Boundary Layer Model's Wind output.

The Model: Hurricane Boundary Layer (HBL) Model

• A three-dimensional model developed with a focus on improving surface wind forecast during landfall of hurricanes.

• Horizontal and vertical resolution of the model is 1km and 30m; respectively.

• The wind outputs are saved at every minute interval.

• Model uses a vortex-following moving system.

• Computational routines are written in Fortran and the model uses Intel’s Message Passing Interface (MPI) to run in parallel across different nodes and CPUs.

The Challenges

• Because of higher spatial and temporal resolution, output netCDF files can get very large (~20-30 GBs).

• Programs i.e. NCAR Command Language (NCL), Matlab takes longer time to process the data; usually an hour to process a HBL forecast data of a day (1440 minutes).

• In addition to that, Matlab and NCL doesn’t have parallel processing system.

Why Parallel Processing?

• A parallel post-processing program for an MPI-based Hurricane Boundary Layer Model.

• To meet the demand of operational forecast that requires faster & efficient analysis within a limited time range for decision making.

• To take the advantage of recent advancement in High-Performance computing system.

• Significant progress in open-source software development.

Xarray and Dask

• Xarray is a python package that is developed to work efficiently with multi-dimensional array .

• Dask is a python-based program focused on scaling arrays i.e. Numpy, Pandas , Xarray.DataArray etc. on single CPUs or clusters.

• Dask has simple routines i.e. Dask.Delayed which can easily parallelize any python function to run on multiple CPUs.

• We will be using dask.delayed and dask.array.map_blocks to process the output from HBL model.

Required Libraries

• Dask

• Numpy

• xarray

• Matplotlib

• Pandas

• cartopy

• Geocat

• IPython

• FFmpeg

• graphviz

How to run

• two notebooks are provided:

  • one using dask.delayed function which distribute the plotting function as well as whole datasets in to multiple CPUs. Might not be useful if the data-array is too large.

  • another one using dask array map_blocks which creates chunks of data and distribute each chunks as well as data array and plotting function across CPUs.

• Execute each cell; possible edits are needed in second cell depending on your compute architecture. These two notebooks are written and excecute in a SLURM cluster using 30 CPUs.

• Please email me at [e-mail] if you need any help!