mjakobs / HCMM_CNVs

HCMMCNVs is a browser-based software for detecting copy number variants (CNVs) using whole exome sequencing (WES) technology.

HCMMCNVs

HCMMCNVs is a browser-based software for detecting copy number variants (CNVs) using whole exome sequencing (WES) technology in combining multiple processed bam inputs with different disease or tumor types.

How to start the software

Requirement

• R >= 4.0.1

• Shiny >= 1.2.0

• Open R

install.packages('shiny')
library(shiny)
shiny::runGitHub("HCMM_CNVs","lunching", destdir = <your app directory>)

Setting the directory of downloaded HCMMCNVs using destdir (Directory to store the downloaded application files) is suggested because the stored segmentation mean for visualization modeule will be automatically saved under the app directory.

Tutorial of HCMMCNVs can be downloaded at

(Will upload and provide the link of supplementary materials upon publication)

How to Cite

If you find HCMMCNVs usefull in your research please city our paper

(Will add citation upon publication)