This repo provides code and data to reproduce the analysis from:
- Foster, Hill and Lyons (accepted) "Ecological Grouping of Survey Sites when Sampling Artefacts are Present". Journal of the Royal Statistical Society: Series C (Applied Statistics).
DOI: http://dx.doi.org/10.1111/rssc.12211
Vegetation data originally from:
http://www.bionet.nsw.gov.au/
Sub-Antarctic Fish data originally from:
- Hill, N. and Lamb, T. (2015) HIMI Demersal Fish Update and Environmental Covariates. Australian Antarctic Data Centre
DOI: s10.4225/15/5671FDEC717B4
- All code and files should be cloned/downloaded to a single path
- The Sub-Antarctic fish analysis can be run in full
- To properly reproduce the NSW vegetation data analysis, a cluster computer is almost certainly required (you'll need around 60-70 CPU days). If you do wish to perform such an analysis, the code and cluster scripts can be found at a separate repo: https://github.com/mitchest/rcp-cluster-parallelisation
- Otherwise, this repo contains a synthesised version of the NSW vegetation analysis so that the input data, model specifications and diagnostics can be explored
- The best route for feed back on {RCPmod} is to lookup the function authors: https://cran.r-project.org/web/packages/RCPmod/index.html
- Otherwise, feel free to suggest edits here
- Scott Foster (corresponding author; scott.foster@csiro.au)
- Nicole Hill (Nicole.Hill@utas.edu.au)
- Mitchell Lyons (mitchell.lyons@gmail.com / mitchell.lyons@unsw.edu.au)