Meeta Mistry's repositories
tinyatlas
A tiny cell atlas for commonly sequenced organisms.
gitkraken_workshop
Hands on class with GUI GitKraken
learning_github
Hands on class with GUI GitKraken
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
GitHub_workshop_demo
Workshop to demonstrate linking Dataverse to GitHub
Intro-to-Unix-QMB
Workshop for Intro to Unix
docker_config
A repo for dockerfiles for various NGS analyses
bwib-meetup
material we talk in our meet-ups
hbc.github.io
Jekyll based website for the Harvard Chan Bioinformatics Core
knowledgebase
General knowledge for HBC computing
py_sam_2_spikenormbg
takes a folder of data sam files and associated spike sam files to generate spike normailized bedgraphs/bigwigs with optional size selection
north_cordblood
a re-analysis of microarray data (HTA 2.0 arrays) after sample swap
msu_ngs2015
DE analysis module for Week3
ginty_neuron
rna-seq of seven neuron types
dib-training
Web site for Data Intensive Training at UC Davis
Intro-to-R-extended
Intro to R materials for six hour workshop
rubin-array
mouse Gene ST arrays
bcbio.rnaseq
Automatic RNA-seq DE caller benchmarking
angus
Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
2015-03-23-hbc-swc
materials for R session HBC software carpentry workshop
Scripts
Scripts and pipelines