misshie

transanno

accurate LiftOver tool for new genome assemblies

GCATWorkflow

bh24

chatgpt-cli

Yet another ChatGPT command line tool

modkit

A bioinformatics tool for working with modified bases

echtvar

using all the bits for echt rapid variant annotation and filtering

swarm-learning

A simplified library for decentralized, privacy preserving machine learning

swarm-learning-hpe

Experimental repo for Odelia project based on HPE platform. This repo contains multiple models for histopathology and radiology training.

slivar

genetic variant expressions, annotation, and filtering for great good.

statistics2

Shin-ichiro Hara's library, updated for Ruby 1.9 & packaged as a gem.

bio-twobit

A ruby library for accessing 2bit files

dorado

Oxford Nanopore's Basecaller

xrdp-who

See who is logged in with xrdp

rapidgzip

Gzip Decompression and Random Access for Modern Multi-Core Machines

CHM13

The complete sequence of a human genome

SpliceAI

A deep learning-based tool to identify splice variants

unmet-igv

IGV session for UNMET score

Chinese-Pangenome-Consortium-Phase-I

absplice

methylpy

WGBS/NOMe-seq Data Processing & Differential Methylation Analysis

jnord

Java version of Nord (Target CNV detection)

caxlsx

xlsx generation with charts, images, automated column width, customizable styles and full schema validation. Axlsx excels at helping you generate beautiful Office Open XML Spreadsheet documents without having to understand the entire ECMA specification. Check out the README for some examples of how easy it is. Best of all, you can validate your xlsx file before serialization so you know for sure that anything generated is going to load on your client's machine.

VarNote

Fast and scalable variant annotation tool

MARS

MARS: improving Multiple circular sequence Alignment using Refined Sequences

fasta_tools

This package contains Perl programs/scripts that perform frequently needed operations on FASTA format files.

samclip

Filter SAM file for soft and hard clipped alignments

visc

Variant Information Standardization Collegium #1

bamtocov

🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  

SAIGE

GLnexus

Scalable gVCF merging and joint variant calling for population sequencing projects