Júlia Mir Pedrol's repositories
Draw-centromere-with-karyoploteR
Drawing centromere constriction at chromosome ideograms, plotted with karyoploteR package from R
actions-runners
Instructions and scripts for custom GitHub Actions runners
aws_igenomes
configuration for an iGenomes refgenieserver
bioconda-recipes
Conda recipes for the bioconda channel.
configs
Config files used to define parameters specific to compute environments at different Institutions
containers
Bioinformatics containers
crisprseq
[Under construction] A pipeline for all crispr analyses
Flye
De novo assembler for single molecule sequencing reads using repeat graphs
funcscan
(Meta-)genome screening for functional and natural product gene sequences
insertseq
Run INSERT-seq as an nf-core pipeline
multi-package-containers
Testing building mulled containers for multi-requirement tools.
nextflow
A DSL for data-driven computational pipelines
nextflow-website
Nextflow public web site
nf-schema
Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
paths-filter
Conditionally run actions based on files modified by PR, feature branch or pushed commits
PersonalWeb
DBWsubject - personal website
plugins
Nextflow plugins index repository
recipes
recipes & asset classes definitions
refgenconf
A Python object for standardized reference genome assets.
refgenie
Reference genome resource manager
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
test-datasets
Test data to be used for automated testing with the nf-core pipelines
testpipeline
A small example pipeline used to test new nf-core infrastructure and common code.
website
Code and files for the main nf-core website.