mirnylab's repositories
hiclib-legacy
A legacy repository. Was replaced by distiller, cooler, and cooltools.
GenomeArchitectureAndFunction2023
Materials for the workshop at Genome Architecture and Function 2023 Workshop
one_sided_extrusion
Codes relevant for "Chromosome organization by one-sided and two-sided loop extrusion"
mirnylib-legacy
A legacy repository. Useful functionality was ported to cooltools.lib.numutils.
moving-barriers-paper
Simulation and analysis codes used in Banigan*, Tang*, van den Berg* et al. Transcription shapes 3D chromatin organization by interacting with loop-extruding cohesin complexes, bioRxiv (2021)
TMB_analysis
R code and data for "Limited evidence of tumour mutational burden as a biomarker of response to immunotherapy", C Gurjao et al., 2020
GenomeArchitectureAndFunction2024
Materials for the workshop at Genome Architecture and Function 2024 Workshop
openmm-polymer-legacy
A legacy repository. Was replaced by polychrom.
pairsamtools
a legacy repo to avoid breaking existing pipelines
chicken2.0_paper
Repository for analysis code related to Chicken2.0