miracum / obds-to-fhir

This project contains a Kafka Stream processor that creates FHIR resources from oBDS-XML data and writes them to a FHIR Topic.

obds-to-fhir

This project contains a Kafka Stream processor that creates FHIR resources from Onkostar oBDS-XML data and writes them to a FHIR Topic.

Used FHIR profiles

See package.json for a list of used packages and their versions.

Observations

• Histologie (https://simplifier.net/oncology/histologie)
• Grading (https://simplifier.net/oncology/grading)
• TNMc (https://simplifier.net/oncology/tnmc)
• TNMp (https://simplifier.net/oncology/tnmp)
• Fernmetastasen (https://simplifier.net/oncology/fernmetastasen-duplicate-2)
• Tod Ursache (https://simplifier.net/oncology/todursache)

Condition

• Primärdiagnose (https://simplifier.net/oncology/primaerdiagnose)

Procedure

• Operation (https://simplifier.net/oncology/operation)
• Strahlentherapie (https://simplifier.net/oncology/strahlentherapie)

MedicationStatement

• Systemtherapie (https://simplifier.net/oncology/systemtherapie)

Patient

• Patient (https://simplifier.net/medizininformatikinitiative-modulperson)

Dev

Dev Stack

• Zookeeper: $DOCKER_HOST_IP:2181
• Kafka Broker: $DOCKER_HOST_IP:9092
• Kafka Rest Proxy: $DOCKER_HOST_IP:8082
• Kafka Connect: $DOCKER_HOST_IP:8083
• AKHQ: $DOCKER_HOST_IP:8080
• Oracle DB: jdbc:oracle:thin:@//$DOCKER_HOST_IP:1521/COGN12 (Use credentials from init script)

Prerequisites

Download Confluent JDBC Connector and place it in folder ./connectors before starting up.

JDBC Connector Download: https://www.confluent.io/hub/confluentinc/kafka-connect-jdbc

Run with

dc up:

\$ sh up.sh

dc down (except of Oracle database)

\$ sh down.sh

deploy connectors

\$ sh deploy-connectors.sh

reset topics

\$ sh reset-topics.sh