A curated list of awesome libraries, datasets, tutorials, papers, and other resources related to Heart Rate Variability (HRV) analysis. This repository aims to be a comprehensive and organized collection that will help researchers and developers in the world of HRV!
- HRV: Standards of Measurement, Physiological Interpretation and Clinical Use
- Kubios HRV Standard : Kubios HRV Software | Kubios HRV Scientific
- neuropsychology/NeuroKit2 : NeuroKit2: The Python Toolbox for Neurophysiological Signal Processing
- MIT-LCP/wfdb-python : Native Python WFDB package
- cbrnr/sleepecg : Sleep stage detection using ECG
- berndporr/py-ecg-detectors : Popular ECG R peak detectors written in python
- scientisst/BioSPPy : Biosignal Processing in Python[Deprecated]
- paulvangentcom/heartrate_analysis_python : HeartPy - Python Heart Rate Analysis Toolkit
- 2002-An advanced detrending method with application to HRV analysis-1196
- 2018-An Open Source Benchmarked Toolbox for Cardiovascular Waveform and Interval Analysis-185 | code-m
- 2020-RR-APET - Heart rate variability analysis software-15 | code-py
- 2020-Heart rate n-variability (HRnV) and its application to risk stratification of chest pain patients in the emergency department-19 | code-m
- 2021-Heart Rate Variability in Psychology: A Review of HRV Indices and an Analysis Tutorial-87
- 2021-HRnV-Calc: A software package for heart rate n-variability and heart rate variability analysis | code-m
- 2021-Unveiling the Structure of Heart Rate Variability (HRV) Indices: A Data-driven Meta-clustering Approach
- 2022-Comprehensive HRV estimation pipeline in Python using Neurokit2: Application to sleep physiology-1
- 2022-Heart rate variability for medical decision support systems: A review-22
- 2023-A Review of Methods and Applications for a Heart Rate Variability Analysis
- 1986-Quantitative Investigation of QRS Detection Rules Using the MIT/BIH Arrhythmia Database-1555
- 1987-A Real-Time QRS Detection Algorithm-8721 | code | PanTompkinsQRS
- 2011-An Efficient R-peak Detection Based on New Nonlinear Transformation and First-Order Gaussian Differentiator-88 | code
- 2013- A Comparison of Three QRS Detection Algorithms Over a Public Database-89
- 2014-A real-time QRS detector based on higher-order statistics for ECG gated cardiac MRI-22
- 2014-3DQRS: A method to obtain reliable QRS complex detection within high field MRI using 12-lead ECG traces-25
- 2017-A convolutional neural network based approach to QRS detection-57
- 2020-A Crucial Wave Detection and Delineation Method for Twelve-Lead ECG Signals-20
- 2020-A Real Time QRS Detection Algorithm Based on ET and PD Controlled Threshold Strategy
- 2020-Analysis of Pan-Tompkins Algorithm Performance with Noisy ECG Signals-53
- 2021-Robust R-Peak Detection in Low-Quality Holter ECGs Using 1D Convolutional Neural Network-43 | code
- 2021-Robust Peak Detection for Holter ECGs by Self-Organized Operational Neural Networks-11 | code
- 2022-QRS complexes and T waves localization in multi-lead ECG signals based on deep learning and electrophysiology knowledge-9
- 2022-Pan-Tompkins++: A Robust Approach to Detect R-peaks in ECG Signals-1 | code
- 2022-Tiny-HR: Towards an interpretable machine learning pipeline for heart rate estimation on edge devices-2 | code
- 2022-Robust R-peak detection in an electrocardiogram with stationary wavelet transformation and separable convolution-9 | code
- 2023-A Deep Learning Architecture Using 3D Vectorcardiogram to Detect R-Peaks in ECG with Enhanced Precision |
- 2018-An efficient compression of ECG signals using deep convolutional autoencoders-182
- 2020-An Efficient Lossless Compression Method for Periodic Signals Based on Adaptive Dictionary Predictive Coding-3
- 1985-Removal of base-line wander and power-line interference from the ecg by an efficient fir filter with a reduced number of taps-487
- 2015-Removal of noise from electrocardiogram using digital fir and iir filters with various methods
- 2018-Baseline wander removal methods for ECG signals- A comparative study-19
- 2018-Deep recurrent neural networks for ecg signal denoising-94
- 2019-Deep Learning Models for Denoising ECG Signals-66
- 2019-Noise Reduction in ECG Signals Using Fully Convolutional Denoising Autoencoders-192 | code
- 2021-DeepFilter- An ECG baseline wander removal filter using deep learning techniques-13 | code
- 2023-DeScoD-ECG- Deep Score-Based Diffusion Model for ECG Baseline Wander and Noise Removal-2 | code
- 2013-Detecting outliers: Do not use standard deviation around the mean, use absolute deviation around the median-3637 | code
- 2019-A robust algorithm for heart rate variability time series artefact correction using novel beat classification-164 | code-systole | code-hrv-correction
- 2019-Outlier Detection: How to Threshold Outlier Scores?
- Influence of Artefact Correction and Recording Device Type on the Practical Application of a Non-Linear Heart Rate Variability Biomarker for Aerobic Threshold Determination-30
- 2022-Impact of Using Different Levels of Threshold-Based Artefact Correction on the Quantification of Heart Rate Variability in Three Independent Human Cohorts-51
- Anomaly Detection Learning Resources : Anomaly detection related books, papers, videos, and toolboxes
- awesome-TS-anomaly-detection : List of tools & datasets for anomaly detection on time-series data.
- PyOD : A Comprehensive and Scalable Python Library for Outlier Detection (Anomaly Detection)
- TODS : An Automated Time-series Outlier Detection System
- 2015-Real-Time Patient-Specific ECG Classification by 1D Convolutional Neural Networks-1605
- 2020-Automatic diagnosis of the 12-lead ECG using a deep neural network-482 | code
- 2021-Real-Time Patient-Specific ECG Classification by 1D Self-Operational Neural Networks-34 | code
- 2021-Automatic ECG Classification Using Continuous Wavelet Transform and Convolutional Neural Network-136 | code
- 2021-An Attention-based Deep Learning Approach for Sleep Stage Classification with Single-Channel EEG-212 | code
- 2022-A novel deep learning package for electrocardiography research-1 | code
- 2022-ECG-based Real-time Arrhythmia Monitoring Using Quantized Deep Neural Networks: A Feasibility Study-24 | code
- 2022-ECG Heartbeat classification using deep transfer learning with Convolutional Neural Network and STFT technique-6 | code heartkit
- 2022-Classification of ECG based on Hybrid Features using CNNs for Wearable Applications-6 | code heartkit
- 2022-Classification of Electrocardiogram Signals Based on Hybrid Deep Learning Models-5
- 2022-ECG-based real-time arrhythmia monitoring using quantized deep neural networks: A feasibility study-30 | code
- 2023-A Tiny Matched Filter-Based CNN for Inter-Patient ECG Classification and Arrhythmia Detection at the Edge-5
- 2023-Efficient Classification of ECG Images Using a Lightweight CNN with Attention Module and IoT-1
- 2023-Deep Learning-Based ECG Arrhythmia Classification: A Systematic Review-18
- Paperwithcode Arrhythmia Detection
- Github Awesome awesome-ai-cardiology
- Heart Disease Classification using Transformers in PyTorch
- 2022-Robustness of electrocardiogram signal quality indices-16
- 2023-Learned Kernels for Interpretable and Efficient Medical Time Series Processing | code
- https://github.com/nliulab/HRnV-Calc#metrics-descriptions
- https://github.com/cliffordlab/PhysioNet-Cardiovascular-Signal-Toolbox#iii-guide-to-output
- https://www.mdpi.com/1424-8220/21/12/3998 Table 1. A summary of HRV indices according to their respective analysis domains.
- https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9307944/table/tbl0001/?report=objectonly
| Metrics | Units | Description |
|---|---|---|
| Tiem Domain | ||
| Average RR | ms | The mean of RR intervals |
| SDRR | ms | The standard deviation of RR intervals |
| Average HR | 1/min | The mean of heart rate |
| SDHR | 1/min | The standard deviation of heart rate |
| RMSSD | ms | Square root of the mean squared differences between successive RR intervals |
| NN50 | count | Numbers of RR intervals differ more than 50 ms from the previous intervals |
| pNN50 | % | Percentage of NN50 intervals within the entire RR intervals |
| RR Skewness | - | The skewness of the RR intervals distribution |
| RR Kurtosis | - | The kurtosis of the RR intervals distribution |
| RR Triangular Index | - | The integral of the RR intervals histogram divided by the height of the histogram |
| Frequency Domain | For more detailed documentations of the frequency domain metrics, check out here. | |
| VLF, LF, and HF Peak frequencies | Hz | The peak frequencies in the power spectral distribution (PSD) for VLF, LF, and HF bands |
| VLF, LF, and HF Powers | Absolute powers of VLF, LF, and HF bands | |
| VLF, LF, and HF Power Percentages | % | The percentage for powers of VLF, LF, and HF bands within the overall spectrum |
| LF and HF Normalized Powers | n.u. | Normalized powers for LF and HF bands |
| Total Power | The overall power of the PSD | |
| LF/HF | - | The ratio between the powers of LF and HF bands |
| Nonlinear Domain | ||
| Poincare SD1 and SD2 | ms | The width and length of the eclipse fitted in the Poincare plot |
| App_Ent | - | Approximate entropy |
| Sam_Ent | - | Sample entropy |
| DFA α1 and α2 | - | Short-term and long-term fluctuations of detrended fluctuation analysis (DFA) |
- Heart Rate Variability Analysis with the HRV Toolkit
- Everything You Should Know About Heart Rate Variability (HRV)
- MIT-BIH Arrhythmia Database
- St Petersburg INCART 12-lead Arrhythmia Database
- MIT-BIH Polysomnographic Database
- ECG GUDB : High precision ECG Database with annotated R peaks, recorded and filmed under realistic conditions
- Chinese Cardiovascular Disease Database—CCDD Dataset
- The 8th International Conference on Biomedical Engineering and Biotechnology (ICBEB 2019)
- CSPC2020
- Lobachevsky University Electrocardiography Database (LUDB)
- St. Petersburg Institute of Cardiological Technics 12-lead Arrhythmia Database (IN- CART)
We welcome your contributions! Please follow these steps to contribute:
- Fork the repo.
- Create a new branch (e.g.,
feature/new-hrv-resource). - Commit your changes to the new branch.
- Create a Pull Request, and provide a brief description of the changes/additions.
Please make sure that the resources you add are relevant to the field of Heart Rate Variability. Before contributing, take a look at the existing resources to avoid duplicates.
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