This repository is a recipe for deploying miniwdl-aws and GWFCore to use within Amazon SageMaker Studio, a web IDE with a terminal and filesystem browser. You can use the terminal to operate miniwdl run against GWFCore's AWS Batch stack, the filesystem browser to manage the inputs and outputs on EFS, and the Jupyter notebooks to further analyze the outputs.
Get started with our blog post, Using miniwdl, GWFCore, and SageMaker Studio as a cloud IDE for genomics workflows