mingyue-mingyue's repositories
datasets
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
biocode
Bioinformatics code libraries and scripts
Bioinformatics-cook
Perl/Python/R scripts for bioinformatics analysis
oneliners
Useful bash one-liners for bioinformatics.
bioperl-live
Core BioPerl 1.x code
popgen-notes
Population genetics notes
ratite-genomics
Scripts and other material for the assembly and analysis of ratite genomes.
scripts
Scripts for analysis used during the course
psmc
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
common_scripts
my bin directory
common_analyses
Repository of common bioinformatics scripts
sv_selection
Code for Yan et al., "Local adaptation and archaic introgression shape global diversity at human structural variant loci."
mirrors-china
Mirrors and registries in China to speedup your package installation.
genomics-analysis-pipeline
Some useful bioinformatics pipelines for genomics analysis
assemblathon2-analysis
collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)
google-access-helper
谷歌访问助手破解版、谷歌翻墙、谷歌梯子、谷歌梯子扩展工具、谷歌商店访问、Chrome翻墙
applied_population_genetics
A textbook on population genetics
GWAS_script
Working on cotton resequencing
SHO_analysis_2020
R scripts for running downstream analysis of resequencing data
HUPAN
Human pan-genome analysis pipeline
graph-genomics-review
Pangenome graphs (review article on graph-based pangenomic methods)
orthomcl_tools
A couple of tools I find indispensable for post orthomcl down-stream analysis.
BuffaloAssemblyScripts
BuffaloAssemblyScripts
GoatAssemblyScripts
A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly
admixr
an R package for admixture analyses