| Name | Date |
|---|---|
| KEGG database usage | 2021-07-07 |
| fly gene age inference by phylostratigraphy | 2021-07-07 |
| FlyXCDB-A Resource for Drosophila Cell Surface and Secreted Proteins and Their Extracellular Domains | 2021-07-07 |
| Fly gene regulatory network of TF-target database | 2021-07-07 |
| FlyBase gene group usage | 2021-07-07 |
| FlyBase gene GO annotation | 2021-07-07 |
| Classify fly genes into functional categories | 2021-07-07 |
| Essential gene database | 2021-07-07 |
| Fly protein complex database | 2021-07-07 |
| Metazoan protein complex database | 2021-07-07 |
| Panther GO slim terms | 2021-07-07 |
| Fly genes divergence measured by dN, dS | 2021-07-07 |
| PPI database (string, biogrid) | 2021-07-07 |
| Flycircuit | 2021-08-26 |
| GO terms map to genes | 2021-09-04 |
| DroID_TF-gene interaction | 2021-09-07 |
| fly X.chr, distance between dosage.compensation.complex and HAS | 2021-11-02 |
| fly metabolomics | 2021-11-12 |
| Gene Origin inference by phylostratigraphy | 2022-11-22 |
| Name | Description | Note |
|---|---|---|
| Orthodb | the hierarchical catalogue of orthologs, example R parsing script | |
| homologene | An r package that works as a wrapper to NCBI HomoloGene | Updating the good old Homologene database |
| InParanoid | ortholog groups with inparalogs | in-paralogs,out-paralogs,orthologs |
| EggNOG | a hierarchical, functionally and phylogenetically annotated orthology resource | |
| GenTree | The time tree of genes along the evolution history | human and fly age data available |
| GenOrigin | GenOrigin: A comprehensive protein-coding gene origination database on the evolutionary timescale of life | Original paper |
| GeneAge | This section of GenAge features genes associated with ageing and/or longevity in model organisms. |
Converting single-cell data structures between Bioconductor and Python
- Data pre-processing and normalization
- Download data in R via url
- Download bioproject and perform mapping in perl
- quantitative genetics
- population genetics
- life history evolution Aging Sex difference Developmental biology
- lab experiment
- natural population
- cross-species divergence or convergence
- temporal, spatial, group (condition: time points, various tissues, sex)
- G matrix, additive genetic var, heritibility
- Ne, selection coefficient, site frequency spectrum, coalescent
- matrix facterization
- random matrix
- diffusion process (drift, cell lineage)
- dynamic system (discrete, matrix, cell kinetics)
- multi-level model (linear mixed model)
- entropy (aging)
- Structural equation modelling (SEM)