Mahdi Imani's repositories
Language:R000
Multiple-Modal-Adaptive-Estimation-using-Boolean-Kalman-Filter
The inference of Boolean gene regulatory networks observed through noise is concern of this package. The algorithm is based on the optimal MMSE state estimator for a Boolean dynamical system, known as the Boolean Kalman Filter (BKF). In the presence of partial knowledge about the network, a bank of BKFs representing the candidate models is run in parallel in a Bayesian framework known as a multiple model adaptive estimation (MMAE). Reference: Imani, Mahdi, and Ulisses Braga-Neto. "Optimal gene regulatory network inference using the Boolean Kalman filter and multiple model adaptive estimation." 2015 49th Asilomar Conference on Signals, Systems and Computers. IEEE, 2015.