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Magnus G. Jespersen (milnus)

milnus

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Location:Denmark

Twitter:@magnus_gj

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Magnus G. Jespersen's repositories

Magphi

Tool intended to pull out sequences and annotations between insertion sites specified by the user.

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Corekaburra

Program to find core gene consensus synteny, hotspots between these, and construct spatially aware multiple sequence alignments of core genes

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pioreactor_turbidostat_shiny

An R shiny app to analyse pioreactor OD600 measurements when running in turbidostat mode

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bioconda-recipes

Conda recipes for the bioconda channel.

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CRISPRi-seq

Design and efficiency evaluation of genome-wide sgRNA libraries for CRISPRi-seq

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Cross_replicore_similarities

Scripts to identify regions across complete genomes that have high similarity. These can be used to produce 'shadow plots' with relative genome positions

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Pan_genome_benchmarking

Collection of scripts and data to benchmark pan-genome tools

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panaroo

An updated pipeline for pangenome investigation

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PIRATE

A toolbox for pangenome analysis and threshold evaluation.

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resplat-github-workshop

Workshop for Github (Research Platform Services)

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unique_CRISPRi_segments

Small iPython notebook to run seqkit and find number of unique CRISPRi sequences in a set of sequences

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