millersan's repositories
awesome-public-datasets
A topic-centric list of HQ open datasets. PR ☛☛☛
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
blastdb_nt-nr
blast nt nr db create and scientific name count.
CBNplot_for_bulk_cell_talk
Bayesian network plot for the enrichment analysis results
ChatGPT-Academic-Prompt
Use ChatGPT for academic writing
CrossTalkeR
R package to do the Ligand Receptor Analysis Visualization
dynmethods
A collection of 50+ trajectory inference methods within a common interface 📥📤
MPAL-Single-Cell-2019
Publication Page for MPAL Paper 2019
MultiK_try
MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via a multi-resolution perspective.
rimmi.rnaseq
set of functions for genomics data analysis
scMetabolism
Quantifying metabolism activity at the single-cell resolution
scMiko
R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-cell analytic work flows.
scrna_seurat_pipeline
comprehensive analysis of single-cell transcriptomics data
sepsis
Top-performing algorithm for DII National Data Science Challenge
sepsis3-mimic
Evaluation of the Sepsis-3 guidelines in MIMIC-III
seurat-wrappers
Community-provided extensions to Seurat
sig-bio-shiny
A standalone R shiny application for doing significant biology on a set of genes
wishbone
Wishbone is an algorithm to align cells along developmental trajectories with branches