milkschen

Nae-Chyun Chen's repositories

leviosam2

Fast and accurate coordinate conversion between assemblies

Language:C++MIT107 2 27

chaintools

Utilities for the genomic chain format

Language:PythonMIT5 3 5

levioSAM2-experiments

Experiments for levioSAM

Language:PythonMIT1 10

LZSS_verilog

Language:Verilog1 20

matchall

Accurate matching of variant alleles using local haplotypes

Language:PythonBSD-3-Clause1 1 2

openchromatinprediction

Language:Python1 3 2

approx_counting_bloom_filter

Language:Jupyter Notebook020

bioconda-recipes

Conda recipes for the bioconda channel.

Language:Shell000

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Language:CGPL-3.0000

chm13_rdna_chain

Language:Python020

htslib

C library for high-throughput sequencing data formats

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pav

Phased assembly variant caller

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SC3

A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments

Language:R010

scratch

Language:PythonGPL-3.0000

svpop

Variant annotation and merging pipeline

Language:Python000

varmatch

robust matching of small variant datasets using flexible scoring schemes

Language:C++Apache-2.0000

vcf2msa

convert a multi-sample VCF file to a multiple sequence alignment (C)

Language:C010

vim_settings

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