mikailweston's repositories
analysis-tools
Code for analyzing data saved by the Open Ephys GUI
Cinder
Cinder is a community-developed, free and open source library for professional-quality creative coding in C++.
cookbook-2nd-code
Code of the IPython Cookbook, Second Edition, by Cyrille Rossant, Packt Publishing 2018 [read-only repository]
cusignal
cuSignal - RAPIDS Signal Processing Library
DABEST-python
Data Analysis with Bootstrapped ESTimation
ecephys_spike_sorting
Modules for processing extracellular electrophysiology data from Neuropixels probes
ephys2plx
Here are some Matlab .m files and a Matlab mex function used to convert Open Ephys data files to the Plexon .plx file, which can be opened by Plexon Offline-Sorter.
example
Example showing how to run the KlustaSuite on a raw dataset.
GUI
Software for electrophysiology data acquisition
pyecog
For classifying single channel ECoG recordings (iEEG)
headstage
32-channel headstage based on the Intan RHD2132 chip
JUCE
The JUCE cross-platform C++ framework.
Kilosort3
Fast spike sorting with drift correction for up to a thousand channels
klustakwik
Fast software for high-dimensional cluster analysis using the masked EM algorithm for Gaussians mixtures. (Can also be used in "classical" mode for standard hard EM algorithm).
klustakwik2
Fast software for high-dimensional cluster analysis using the masked EM algorithm for Gaussians mixtures
klustaviewa
GUI for spike sorting manual stage in Python
kwiklib
Shared features between the projects (files, statistics, utils...)
npy-matlab
Experimental code to read/write NumPy .NPY files in MATLAB
phy
phy: interactive visualization and manual spike sorting of large-scale ephys data
pynacollada
pynapple collaborative data analysis (high level python scripts) :tropical_drink:
scientific-python-lectures
Lectures on scientific computing with python, as IPython notebooks.
simpleclust
Manual spike clustering software for matlab
spikedetekt
Electrophysiological spike detection for large dense electrode arrays
SpikeGLX
HHMI Neural Recording System
ucl-latex-thesis-templates
UCL LaTeX thesis templates.