Miguel Ponce-de-Leon's repositories
cobrapy-tutorial
A tutorial on cobrapy
ECCB2020-T05
Material for the tutorial 05 of ECCB (Computational modelling of cellular processes: regulatory vs metabolic systems)
cobra_cbm_tutorial
This a basic tutorial on Constraint-Based Metabolic Modeling based on python-cobra
PhysiCelldFBA
PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch. Thanks!
pyfastcore
A python implementation of the context-specific model extraction method FastCore by Vlassis et al. (2014).
PhysiBoSSv2-EMEWS
EMEWS template for PhysiBoSSa
booleannet
Boolean Network Modeling
consistency_analysis
Python implementation of the unconnected modules detection method.
EpiCommute
Simulate an epidemic metapopulation model with mobility-reducing containment strategies
gim3e
Gene Inactivation Moderated by Metabolism, Metabolomics, and Expression (COBRApy)
mig-testing
this is just a test to lear how to connect data to zeno
MMCAcovid19.jl
Microscopic Markov Chain Approach to model the spreading of COVID-19
PhysiCell-povwriter
Simple cutaway POV-Ray
python-loader
Python data loader for PhysiCell digital snapshots
scikit-mobility
scikit-mobility: mobility analysis in Python