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Miguel Ponce-de-Leon (migp11)

migp11

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Company:Barcelona Supercomputing Center

Location:Barcelona

Home Page:https://sites.google.com/view/migp11/home

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Miguel Ponce-de-Leon's repositories

pctk

A set of scripts and utilities to analyze PhysiCell/hisyBoSS simulations

Language:PythonLicense:BSD-3-ClauseStargazers:7Issues:6Issues:0

cobrapy-tutorial

A tutorial on cobrapy

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ECCB2020-T05

Material for the tutorial 05 of ECCB (Computational modelling of cellular processes: regulatory vs metabolic systems)

Language:Jupyter NotebookLicense:MITStargazers:5Issues:5Issues:1

consistency-analysis

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cobra_cbm_tutorial

This a basic tutorial on Constraint-Based Metabolic Modeling based on python-cobra

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PhysiCelldFBA

PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch. Thanks!

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pyfastcore

A python implementation of the context-specific model extraction method FastCore by Vlassis et al. (2014).

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spheroid-tnf-v2-emews

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csm4cobra

A set of functions and scripts to perform context-specific gene deletions in-silico experiments on genome-scale metabolic models

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PhysiBoSSv2-EMEWS

EMEWS template for PhysiBoSSa

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alephsys.github.io

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booleannet

Boolean Network Modeling

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chiSIM

Chicago Social Interaction Model (chiSIM) framework repository

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cobrapy

COBRApy is a package for constraint-based modeling of biological networks

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consistency_analysis

Python implementation of the unconnected modules detection method.

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corda

An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al

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EpiCommute

Simulate an epidemic metapopulation model with mobility-reducing containment strategies

License:MITStargazers:0Issues:0Issues:0

gim3e

Gene Inactivation Moderated by Metabolism, Metabolomics, and Expression (COBRApy)

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iSIM

Python, R, and Matlab code relating to the iSIM manuscript

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mcadre

metabolic Context-specificity Assessed by Deterministic Reaction Evaluation (mCADRE) for generating draft tissue-specific metabolic models

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mig-testing

this is just a test to lear how to connect data to zeno

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MMCAcovid19.jl

Microscopic Markov Chain Approach to model the spreading of COVID-19

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PhysiBoSSv2_TNF_model

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PhysiCell-povwriter

Simple cutaway POV-Ray

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practica_fba

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python-loader

Python data loader for PhysiCell digital snapshots

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scikit-mobility

scikit-mobility: mobility analysis in Python

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systems_biology_course

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Thesis_Supp_material

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