Giters
microbiome
/
microbiome
microbiome R package
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Stargazers:
286
Watchers:
33
Issues:
188
Forks:
54
microbiome/microbiome Issues
microbiome::transform confusing transformation
Updated
a month ago
Comments count
1
microbiome::plot_composition, legend issue in composition plot
Closed
4 months ago
Comments count
1
plot_regression() interpretation
Updated
a year ago
a
Closed
a year ago
Comments count
1
plot_core on phyloseq obtained from the core function
Closed
a year ago
Comments count
1
read_phyloseq / read_biom2plyloseq does not read tab-delim meta-data files
Closed
a year ago
Comments count
2
Malfunction for plot_core() function
Updated
a year ago
Comments count
1
Sample and OTU ordering do not work for heatmap but do work for barplot
Closed
a year ago
Comments count
4
Can't make "Biserial" association analysis work
Closed
a year ago
Comments count
2
CLR transform
Closed
a year ago
Comments count
3
CLR Transformation
Closed
a year ago
Comments count
1
illumina sequencing only or also sanger sequencing or nanopore sequencing?
Closed
a year ago
Comments count
2
Error when using boxplot_alpha
Closed
a year ago
Comments count
8
does microbiome::transform compositional log-transform my data also?
Closed
2 years ago
Comments count
3
plot_regression() on phyoseq?
Closed
2 years ago
Comments count
1
Converting sequences to taxa names of 'otu_table' in phyloseq object
Closed
2 years ago
Comments count
5
alpha diversity comparison between rarified and unrarified?
Closed
2 years ago
Comments count
3
linear model and microbiome compositional data
Closed
2 years ago
Comments count
2
plot_composition when using group_by
Closed
2 years ago
Comments count
3
prevalence function
Closed
2 years ago
Comments count
4
Problem with otu_table
Closed
2 years ago
Comments count
4
relative or absolute abundances for statistical analysis (Differential abundance analysis), any thoughts?
Closed
2 years ago
Comments count
1
Question: difference between detection and prevalence in core_members?
Closed
2 years ago
Comments count
4
trouble installing microbiome package in R using macOS
Closed
2 years ago
error with the plot
Closed
2 years ago
Comments count
2
Error when calculating alpha diversity metrics on compositional data
Closed
2 years ago
Comments count
12
Cannot find function boxplot_alpha
Closed
2 years ago
Comments count
6
Colors in plot
Closed
2 years ago
Comments count
3
relative abundance pvalues?
Closed
2 years ago
Comments count
3
Error in "Divergence within individual over Time" parameters
Closed
2 years ago
Comments count
5
tutorial core micrbiota query?
Closed
2 years ago
Comments count
4
boxplot_alpha
Closed
2 years ago
Comments count
2
Error in access(object, "sam_data", errorIfNULL) : sam_data slot is empty.
Closed
2 years ago
Comments count
2
Unavailable for latest R version
Closed
2 years ago
Comments count
1
relative abundance of each taxa?
Closed
2 years ago
Comments count
1
issue with microbiome::add_besthit and microbiome::add_refseq
Closed
3 years ago
Comments count
2
top species in stacked bar chart?
Closed
3 years ago
Comments count
2
Issue with microbiome::transform
Closed
3 years ago
Comments count
15
add_refseq
Closed
3 years ago
Comments count
1
ALR transform
Closed
3 years ago
Comments count
1
plot_core() error
Closed
3 years ago
Comments count
5
Conversions data formats from phyloseq to TSE
Closed
3 years ago
Comments count
2
merge_phyloseq problem
Closed
3 years ago
top_taxa function for top 20 Genus?
Closed
3 years ago
Comments count
6
stacked bar chart and loess ggplot for top 20 using aggregate_top_taxa?
Closed
3 years ago
Comments count
10
Problem with hotplot
Updated
3 years ago
Comments count
1
Automatic conversion to vectors with one-sample table
Updated
3 years ago
Comments count
1
error when using categorical data for associate function
Closed
3 years ago
Comments count
5
a bug in integer check in microbiome::transform?
Closed
3 years ago
Comments count
3
error in plot_composition with plot.type = "heatmap"
Closed
3 years ago
Comments count
2
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