Michal Wozniak's repositories
TCGAnalyzeR
TCGAnalyzeR which is an R Shiny based web application enables an integrated analysis of genomic, transcriptomic and clinical data 33 cancer types in TCGA projects; 123 pre-computed pan-cancer cohorts (MSI-H, Immune, PAM50, Triple Negative, IDH1 etc).
pRRophetic
R package
GDCRNATools
GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC
MutantGene
A Python library that serves to link genes that suffered some type of mutation, detected from neoplasm samples and stored in MAF files, to their Gene Ontology terms. This is a tool to help researchers understand the impact of each mutation on the neoplasm phenotype.
genstats
Statistics course for JHU Genomic Data Science Sequence
denovogear
A program to detect denovo-variants using next-generation sequencing data. (http://www.nature.com/nmeth/journal/v10/n10/full/nmeth.2611.html)