michelole / tnm_ontology

TNM Ontology

This is a formal model representing the rules for clinical stage (CS) evaluation according to the 6th edition of TNM. It was developed at the Center for International Research (CIPE) from the A.C. Camargo Cancer Center (São Paulo, Brazil).

If you use data or code in your work, please cite our conference paper:

An Ontology for TNM Clinical Stage Inference. Felipe Massicano, Ariane Sasso, Henrique Amaral-Silva, Michel Oleynik, Calebe Nobrega, and Diogo F. C. Patrão. ONTOBRAS, São Paulo, Brazil. 2015. Available at http://ceur-ws.org/Vol-1442/paper_6.pdf.

Creating the axioms

    $ ./create_rdf_axioms.py > ontologies/axioms.owl

Creating the annotations

    $ ./scriptCidTNM.py [-p|--prefixTNM] uri_tnm [-c|--prefixICD10] uri_icdo > ontologies/annotations.rdf

For example:

./scriptCidTNM.py -p http://cipe.accamargo.org.br/ontologies/tnm_6th_edition.owl -c http://cipe.accamargo.org.br/ontologies/tnm_6e_icdo_topographies.owl > ontologies/annotations.rdf