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michalk8

michalk8

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michalk8's repositories

anndata

Annotated data.

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awesome-jax

JAX - A curated list of resources https://github.com/google/jax

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bioconda-recipes

Conda recipes for the bioconda channel.

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branch-merge

GitHub Action to merge branches in a repository

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cellrank-feedstock

A conda-smithy repository for cellrank.

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conda-forge-pinning-feedstock

A conda-smithy repository for conda-forge-pinning.

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deep-symbolic-optimization

Source code for deep symbolic optimization.

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epiScanpy

Episcanpy: Epigenomics Single Cell Analysis in Python

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LineageOT

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llvm-project

The LLVM Project is a collection of modular and reusable compiler and toolchain technologies. Note: the repository does not accept github pull requests at this moment. Please submit your patches at http://reviews.llvm.org.

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moscot-feedstock

A conda-smithy repository for moscot.

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napari-spatialdata

Interactive visualization of spatial omics data

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NeuralEE

NeuralEE: a GPU-accelerated elastic embedding dimensionality reduction Python package for visualization of large-scale scRNA-seq data.

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omnipath-feedstock

A conda-smithy repository for omnipath.

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ott

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ott-jax-feedstock

A conda-smithy repository for ott-jax.

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pyGPCCA

pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis program to coarse-grain reversible and non-reversible Markov State Models.

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pygpcca-feedstock

A conda-smithy repository for pygpcca.

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scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

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scvelo

RNA Velocity using dynamical modeling

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seml

SEML: Slurm Experiment Management Library

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SingleCellOpenProblems

Formalizing and benchmarking open problems in single-cell genomics

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spatialdata-sandbox

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sphinx-autodoc-typehints

Type hints support for the Sphinx autodoc extension

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squidpy

Spatial Single Cell Analysis in Python

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squidpy-feedstock

A conda-smithy repository for squidpy.

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staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

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TedSim

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transformers

🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

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wot

A software package for analyzing snapshots of developmental processes

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