mhorlacher

rbpnet

Benchmark-RBP

igrads

A Tensorflow 2.x implementation of the explainable AI method 'Integrated Gradients'.

metamotif

Generate consensus sequence motifs from (arbitrary) sequence importance scores.

bioio

CoolBox

Jupyter notebook based genomic data visualization toolkit.

datastructures

Implementations of various datastructures

docker-pile

A collection of dockerized software for Data Science

kafka-connect-jdbc

Kafka Connect JDBC Docker Image.

sc2rbpmap

StreamFork

A small library for streaming data to a number of connecting clients

jpegMedian

Extracts the background image from a sequence of stationary images (JPEG)

BEND

Benchmarking DNA Language Models on Biologically Meaningful Tasks

bioinformatics

BioPhi

BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody sequence design.

gin-config

Gin provides a lightweight configuration framework for Python

mhorlacher.github.io

Forward from mhorlacher.github.io to marchorlacher.com

milatools

Tools to connect to and interact with the Mila (and other) clusters

ngs-scripts

Various small Scripts for NGS Data Analysis

pyutils

Utilities for the Python language

scripts

SimpleProxy

snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see

tensorflow_datasets

TFDS is a collection of datasets ready to use with TensorFlow, Jax, ...