mhanbioinfo's repositories
cfMeDIP-seq-analysis-pipeline
Post-processing pipeline for next-generation circulating methylome data generated by cfMeDIP-seq
DAPPER_LMS
CIBERSORT and Gene-Set Enrichment Analysis of DAPPER Leiomyosarcoma Cohort
FAM72_paralog_expression
testing RNAseq pipelines that accurately assesses expression of FAM72 paralogs
fragmentomicsBEDPE
Fragmentomics R package based on DELPHI scripts
Griffin
A flexible framework for nucleosome profiling of cell-free DNA
IRIS_scmultiomics
IRIS single cell multiomics analysis
LIQUORICE
A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies
make_toy_fastqs
Make toy fastqs with hg38 sequence to avoid privacy issues
MeDEStrandBEDPE
R package MeDEStrand
MEDIPsBEDPE
MEDIPS - MEthylated DNA ImmunoPrecipitation Sequencing analysis
PLBR_fragmentomicsBEDPE
Fragmentomics pipeline accepting BAM or BEDPE as input
SICILIAN
modified version of SICILIAN originally by salzmanlab
MedRemix_BEDPE9
stand alone MedRemix with BEDPE9 input
survminer_ggadjustedcurves
Survival Analysis and Visualization (ggadjustedcurves_fix)
VIGEX_cibersort_survival
INSPIRE cohort VIGEX signature correlation with CIBERSORT and survival analysis