mhalagan

apple-health-extractor

This library provides functionality to parse and extract data from the XML exports of Apple Health app, enabling users to analyze and utilize their health data conveniently.

atlantis-example

A simple terraform project to use along with atlantis bootstrap mode

client-py

Python SMART on FHIR client

cookiecutter-data-science

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

cookiecutter-pypackage

Cookiecutter template for a Python package.

cookiecutter-reproducible-data-science

flow-GFE

Run fasta files through GFE with nextflow

flow-OptiType

Use nextflow to run BAM files through OptiType

ForestMHC

Predictor of MHC-I binding

gatsby-auth-starter-aws-amplify

Starter Project with Authentication with Gatsby & AWS Amplify

gfe-db

Graph database representing IPD-IMGT/HLA sequence data as GFE

gfe_client

Python client for working with the ACT service

gfefhir

Python package for creating FHIR resources with GFE

grimm

GRIMM: Graph IMputation and Matching for HLA Genotypes

HLA

hook

The longshoreman's hook was historically used by longshoremen (stevedores).

imgt_biosqldb

The IMGT/HLA sequence database persisted in a mysql BioSQL DB

jenkins-python-test

Project to test python app CI/CD with Jenkins

mhcpop

Population genetics scripts for the MHC

netMHC-spark

netMHC Apache Spark CLI

pelias

Pelias is a modular open-source geocoder using Elasticsearch.

pyARD

HLA ARS reduction in python

pyGFE

Python package for creating GFE notation from annotated sequences

pyHML

Code for working with HML data in python

redis-simple-cache

Simple redis based cache for storing results of python function calls, json encoded strings or html.

SeqAnn

Python package for doing fast and accurate sequence annotation

service-act

Allele Calling Tool (ACT)

service-ard

service-gfe-submission

Service for getting a GFE from raw sequence data.

service-haplotype-frequency-curation

Service used for curation of Haplotype Frequency