mgschiavon

Mariana Gómez-Schiavon, PhD's repositories

HDM

Heterodimer models

Language:JuliaGPL-3.0000

CoRa is a general framework that quantifies the contribution of a biological feedback control mechanism to adaptation using a mathematically controlled comparison to an identical system that does not contain the feedback. CoRa provides a simple and intuitive metric with broad applicability to biological feedback systems.

Language:JuliaGPL-3.0200

TOOLS

General tools for gene regulatory circuits modeling.

Language:JuliaLGPL-3.0000

GZM_InducibleTF

Modeling inducible transcriptional regulators, GEM & ZPM, dose-response.

Language:MATLABGPL-3.0000

NatureFeedbackdegronLOCKR

Code and data used for Ng et al. (2019; Nature)

Language:Jupyter Notebook000

bioPIDcontrol

Code used for simulations & analysis in Chevalier, Gómez-Schiavon et al. (2019; Cell Systems)

Language:MATLABGPL-3.0400

Epi_EvoDynamics

Evolutionary dynamics of an epigenetic switch in a fluctuating environment

Language:C++GPL-3.0100

BayFish

Bayesian inference of transcription dynamics from population snapshots of smFISH

Language:MatlabGPL-3.0000