mgarber's repositories
covid-19-data
An ongoing repository of data on coronavirus cases and deaths in the U.S.
mgatk
mgatk: mitochondrial genome analysis toolkit
bootcamp_stats
RStudio docker image for stats bootcamp
bioperl-live
Core BioPerl 1.x code
igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
siphy
Phylogenetic footprinting software for genome-wide analysis
ESAT
Stripped-down version of original ESAT code
juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
scriptureV2
Paired end intrinsic support
juicebox
Software for visualizing data from Hi-C and other proximity mapping experiments
Biocore
Umass bioinformatics core code repository