mg14 / cgpVAF

Calculates the Variant Allele Fraction of variants in VCF files

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cgpVAF

Calculates the Variant Allele Fraction for variants sites in VCF and/or BED file This script performs comparative analysis of variant sites in multiple tumour/normal samples in an individual. Also facilitates the merging of varinats sites across the samples in a sample group defined by set of related samples in an individual and provides unbiased pileup[MNV] and exonerate[Indel] output for each variant site.

Installation

  • Download current installer version from git repository
  • ./setup.sh <INSTALL_PATH>

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Calculates the Variant Allele Fraction of variants in VCF files


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