mflounders / cnds_tools

general tools for UPenn CNDS group

CNDS utilities and scripts

heuristics

• ZAPR01_baseline_heuristic.py used with fw-heudiconv to convert scan sequences to BIDS specifications for aslprep and fmriprep

study-specific

• RF1 NCT, single subject behavior plots

pipeline

• Singularity heudiconv-fmriprep-XCP
• rsMRI fc targets

utilities:

• ANTsct-status utility
• new study organization and computing study summary reports
• fcmap averaging and transforms