mflevine

jupyterlab_html

(Merged into JupyterLab Core!) JupyterLab extension for displaying HTML files

hts-nim-sugar

Wrapper code around hts-nim for easy of use

PokeVis

aws-parallelcluster

AWS ParallelCluster is an AWS supported Open Source cluster management tool to deploy and manage HPC clusters in the AWS cloud.

fusioncatcher

Finder of Somatic Fusion Genes in RNA-seq data

gccontent-benchmark

Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)

githubtesting

hts-nim

nim wrapper for htslib for parsing genomics data files

intro2UnixandSGE

resource for unix and SGE beginners

mflevine.github.io

neat-python

Python implementation of the NEAT neuroevolution algorithm

PCAP-core

NGS reference implementations and helper code for mapping (originally part of ICGC-TCGA-PanCancer)

smudgeplot

Inference of ploidy and heterozygosity structure using whole genome sequencing data

toil_container

:whale: A python package with container support for Toil.

webtoolpractice