METASPACE

metaspace

Cloud engine and platform for metabolite annotation for imaging mass spectrometry

Lithops-METASPACE

Lithops-based Serverless implementation of the METASPACE spatial metabolomics annotation pipeline

metaspace-converter

Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData

coloc

Methods for measuring co-localization of ion images

sm-engine

Engine for metabolite annotation for imaging mass spectrometry

offsample

Project to develop methods to recognize off-sample mass spectrometry images

sm-webapp

Frontend of METASPACE web application

survey

Results of a community survey on imaging mass spectrometry in 2015

sm-engine-ansible

Setting up cloud infrastructure for the engine using Ansible

centroidize

helper webapp for SCiLS export to METASPACE

ims-simulator

Simulation of HR imaging mass spectrometry data

metadata

Metadata for imaging mass spectrometry

metaspace-website

Main website of the METASPACE project

data_serve

parsedatabases

Tools for parsing public databases for inclusion in METASPACE

pixel-annot-export

Metaspace pixel annotation export snapshots

sm-analytics-python

Utilities for working with annotations

sm-graphql

GraphQL server for communication between the frontend and the backend

sm-models-server

Prototype for the evaluation server (not ready).

sm-molecular-db

Unified REST API for molecular database data

sm-standalone

[OBSOLETE]