Sean Maden's repositories
recountmethylationManuscriptSupplement
Supplemental methods, scripts, and code for the manuscript "Human methylome variation across Infinium 450K data on the Gene Expression Omnibus"
recountmethylation_server
Server code for Recount-Methylation database.
cmlmanuscript
Resources to reproduce analysis for the manuscript "Consensus Machine Learning for Gene Target Selection in Pediatric AML Risk."
consensus_machine_learning
Package to reproduce analyses for the manuscript "Consensus Machine Learning for Gene Target Selection in Pediatric AML Risk".
figshare-doi-badge
testing badge inclusion in readme
google-research
Google Research
hexSticker
:sparkles: Hexagon sticker in R
Keras-GAN
Keras implementations of Generative Adversarial Networks.
kma
Keep Me Around: Intron Retention Detection
lucid
A collection of infrastructure and tools for research in neural network interpretability.
machine-learning
CS545 scripts, homework, and info for Fall quarter 2018.
methylCC
R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
MTG_celltypes
Human cortical cell types
neoepiscope
predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data
neoepiscope-paper
Scripts for reproducing results from neoepiscope paper
pix2pix
Image-to-image translation with conditional adversarial nets
recount.synth
Resources for research synthesis
recountmethylation_hexsticker
Make the hex sticker for Recount Methylation and affiliated software.
recountmethylation_manuscript_supplement
Supplement for the manuscript "Human methylome variation across Infinium 450K data onthe Gene Expression Omnibus"
RNAseq_Cancer_Biomarkers
Machine Learning to Detect Cancer Biomarkers from RNAseq Data
scaden
Deep Learning based cell composition analysis with Scaden.
tlverse-handbook
🎯 :closed_book: Targeted Learning in R: Causal Data Science with the tlverse
txt2onto
Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.
UMtools
An R-package for analysing Illumina DNA Methylation arrays at the fluorescence intensity level
vapoRwave
📼👾🕹Vaporwave themes and color palettes for ggplot2💾👨🎤📺