merckey's repositories
ASAShortCourse-MultiOmics
Short Course on Multi-Omics
build_rnaseq_paper_public
Code for the paper: Impact of genome build on RNA-seq interpretation and diagnostics
CCI
Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information
CCI_benchmark
forked from wanglabtongji / CCI
csf_aging
Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment
GBmap
Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolution) and how to produce the figures.
GeoMxWorkflows
Workflows for analyzing data with the GeomxTools package and subsequent GeoMx related packages
Hamed_Nat-Commun_2022
A brain precursor atlas reveals the acquisition of developmental-like states in adult cerebral tumours
Han-et-al.-Single-cell-multi-omics
Pipieline in R to analyze single-cell-multi-omics
luca
Single-cell Lung Cancer Atlas with 1.2M cells
Melanoma_Brain_Metastasis
Dissecting the treatment-naïve ecosystem of human melanoma brain metastasis
monocle3-dockerfiles
Listing docker files used in https://hub.docker.com/u/hc27oclock
OSCC-SpatialTranscriptomics
Spatial Transcriptomic Analysis of OSCC samples
ProstateCancerAnalysis
single cell and spatial
rwb
Cross-platform command line executable to access your projects and files.
sanbomics_scripts
scripts and notebooks from sanbomics
single_cell_tutorial_Starlitnightly
单细胞分析的中文pipeline
tabula-muris
Code and annotations for the Tabula Muris single-cell transcriptomic dataset.
TCM
Codes used in pan-T cell analysis