mdraw / knossos_utils

Pure-Python fork of knossos_utils. Only for use as a dependency for sphinx builds until we have knossos_utils wheels

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

knossos_utils

This repository serves as a place for python code that interacts with KNOSSOS data sets or annotation files. However, the code here is standalone and you won't find KNOSSOS-Plugins here (but feel free to be inspired by it when writing plugins).

knossosdataset

knossosdataset provides easy access tp a KNOSSOS-dataset for reading and writing raw and overlay data via Python. It is also able to create KNOSSOS-datasets from scratch by writing knossos.conf's and creating the necessary directories. Moreover, it provides mergelist_tools for working with supervoxel-representations in a KNOSSOS-dataset.

chunky

chunky provides a meta-representation of a knossosdataset to work on the raw data without the need to copy and save it in a different format. It is currently in an early-release stage and will be soon improved in terms of readability (comments, docstrings, examples).

About

Pure-Python fork of knossos_utils. Only for use as a dependency for sphinx builds until we have knossos_utils wheels

License:GNU General Public License v2.0


Languages

Language:Python 100.0%Language:Shell 0.0%