mdcao / japsa

Just Another JAva Package for Sequence Analysis

mdcao/japsa Issues

introducing new variable starting with word 'read' triggers ambiguity in japsa.util.CommandLine
Updated 3 years ago
jsa.np.rtResistGenes - tmp folder not automatically generated, and _ao.fasta not produced when tmp folder made in advance
Updated 3 years ago1
java.lang.OutOfMemoryError: Requested array size exceeds VM limit
Updated 4 years ago
NullPointerException XM compression
Updated 4 years ago2
Understanding of jsa.np.rtSpeciesTyping output
Closed 5 years ago2
identity rate in jsa.hts.errorAnalysis
Updated 5 years ago
Installation failed
Closed 5 years ago3
VNTR.xaf
Updated 5 years ago4
XM data corruption
Updated 5 years ago
VNTRTyper ArrayIndexOutOfBoundsException when handling BAM records with >65535 CIGAR operations
Closed 6 years ago2
Species binning of fastq
Closed 6 years ago1
Refactor `consensusSequence()`
Closed 6 years ago2
Duplicated reads id issue
Closed 6 years ago1
option illen doesn't work in capsim
Closed 7 years ago2
problem with A dynamic, reusable donut chart for D3.js v4
Closed 7 years ago4
npreader
Closed 6 years ago4
Feature request - use floats for base-call quality averages for jsa.np.filter params
Closed 7 years ago3
Release v1.7-05b - jsa.np.npreader
Closed 7 years ago1
Resistance profiling Exception in thread "SSS" java.lang.NullPointerException
Closed 7 years ago1
BC01 empty
Closed 7 years ago1
Adjusting prior using external indel predictions and confidence calculations
Closed 6 years ago
Formula for estimating changes in repeat units
Closed 6 years ago2