Marcus Davy's repositories
advanced-git
Frontend Masters Advanced Git - by Nina Zakharenko
advanced-shiny
Shiny tips & tricks for improving your apps and solving common problems
AKLfaster
materials for a workshop at NZSA/IASC 2017
AlleleFrequency
Allele frequency experimental code repository
asub
A unified array job submitter for LSF, SGE/UGE and Slurm
chem-info
something simple
cmdtk
A toolkit of commands
DESeq2
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DESeq2.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=DESeq2.
fiveMinuteStats
A repo of short "vignettes" illustrating statistical concepts
gff3_validator
Online and command-line GFF3 validator
ggplot2-book
The ggplot2 book
GUSMap
Genotyping Uncertainty with Sequencing data and linkage MAPping
methods-and-musings
A (growing) collection of information contributed by Genomics Aotearoa members. Semi blog post style bites of content.
Neural-Network-from-scratch
Neural Network from scratch using python, and numpy
PBSIM-PacBio-Simulator
This is an updated mirror of the original PacBio Read Simulator
PFRAutomatedWorkflows
Collaborative Prototyping and deployment of informatics workflows
polymapR
Unlinked clone of git@github.com:cran/polymapR.git
Pop-Genomics-Workshop2019
Content for MAPNET Workshop in analysis of low-coverage population genomic data
RLinuxModules
R package that makes linux environment modules available from R
rmarkdown
Dynamic Documents for R
rna-seq_denovo_workflow
Pipeline for transcriptome de novo assembly
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
sandpit
A demonstration repository
shiny-phyloseq
An interactive web application for demonstrating and using phyloseq.
STAT545-UBC.github.io
Main repository for STAT 545 @ University of British Columbia, a course in data wrangling, exploration, and analysis with R.
swirl_courses
:mortar_board: A collection of interactive courses for the swirl R package.
workflowr
Organize your project into a research website