mchowdh200

samplot-ml

animal_svs

giggle-ml

samplot

Plot structural variant signals from many BAMs and CRAMs

stix

Structural Variant Index

.emacs.d

Emacs config

.tmux.d

tmux configuration

.vim

My vim configuration

1kg

arxiv-style

A Latex style and template for paper preprints (based on NIPS style)

cancer-sv-pipeline

AsMac

config-nvim

config-zathura

exome-copy

giggle_test

test singularity container for running giggle in a fixed environment

icgc-data

scripts for working with icgc data portal

local-attention-flax

Local Attention - Flax module for Jax

precision-medicine

samplot-stix

workflows for samplot-stix prototyping

seq-similarity-search

ssec2

Stupid Simple Elastic Compute Cloud

stix-pcawg-pipeline

stix index pipeline using pcawg data on AWS cloud

SV2

Support Vector Structural Variation Genotyper

sv_workshop

svtyper

Bayesian genotyper for structural variants

tuning_playbook

A playbook for systematically maximizing the performance of deep learning models.

utils

vector-integration-simulation-pipeline

A pipeline for simulating viral or vector integration into a host genome