Matthew S Lyon's repositories
GermlineWGS
WGS pipeline
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RemoveAmpliconDuplicates
Removes PCR duplication from amplicon datasets
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VariantReporter
VCF to text table converter
SparkAdapterTrimmer
High performance NGS read trimmer
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Framework
Java functions
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PrimerDesigner
Design PCR primers around chromosomal targets using Primer3. SNPs and ambiguous alignments are removed.
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BoltImport
VCF Neo4j import tool (WebSocket)
VariantDatabaseNeo4jExtension
Neo4j plugin to provide custom REST service for VariantDatabase
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