mbourgey / scRNA_GBM

analysis script for GBM single cell RNA seq data

scRNA_GBM

Analysis script for GBM single cell RNA seq data

Data

Cellranger matrix

The cell_ranger matrices used in the paper analysis could be found here.

Cell annotation .mat file

The cell annotation matrices used in the paper analysis could be found here. Cell annotation are provided as a matlab mat file with the corresponding encoding:

Cell Type	Encoding
Unassigned	0
Mesenchymal	1
Neuronal	2
Astro	3
Progenitor	4
Oligo	5

Temporary missing EGA bam

One of the sample bam file (BT400) is temporary missing in the EGA study EGAS00001004422 and can be found here as long with its index file here.