mbjoseph

CARstan

Conditional autoregressive models in Stan

neuralecology

Code for the paper "Neural hierarchical models of ecological populations"

intro-research-compendia

Training material: how and why to make a research compendium

mlflow-stan

MLFlow with cmdstanr

ab-shrinkage

Code to generate slides about shrinkage for Analyze Boulder presentation

adventofcode21

finnemit

mbjoseph.github.io

Personal website created with distill

capture-recapture-simulations

Simulations for generating & Bayesian model for analysing capture-recapture data

climateR

An R 📦 for getting point and gridded climate data by AOI

slide-templates

Some templates for slide shows

adventofcode22

bambi

BAyesian Model-Building Interface (Bambi) in Python.

cv

example-models

Example models for Stan

FCC24_Group_4

hub-ops

Infrastructure and operations for the Earth Lab JupyterHub

idtreesextraction

NEON-NIWO-misclass

neonHScompendium

niwot_NEON_carabids

Prediction of carabid species distributions at Niwot Ridge

openSAR

Synthetic Aperture Radar (SAR) Tools and Documents from Earth Big Data LLC

pymc-experimental

satclip

PyTorch implementation of SatCLIP

secmr

A research compendium for: “Using visual encounter data to improve capture-recapture abundance estimates”

stan-dev.github.io

Stan website based on the So Simple Jekyll theme.

stantargets

Reproducible Bayesian data analysis pipelines with targets and cmdstanr

stantargets-sandbox

Example of using profiling with stantargets

tmin

translocation

Project describing frog translocations to reestablish populations in the presence of infectious disease