Martín Beracochea's repositories
emacs-config
My personal init.el setup
django-debug-toolbar-mongo
MongoDB panel for the Django Debug Toolbar
autoDocstring
vscode extension that generates docstrings for python files
bac-genomics-scripts
Collection of scripts for bacterial genomics
bioconda-recipes
Conda recipes for the bioconda channel.
bioscripts
Some simple scripts
cloud-toolkit
Terraform configuration to deploy nfs server on cloud infrastructures
conway-gol-ts
Conway's Game of Life in Typescript
csharp-sparkpost
SparkPost client library for the C# Programming Language
cwl-format
A very opinionated code formatter for CWL
django-rest-framework-json-api
JSON API support for Django REST Framework
ebi-metagenomics-webkit-example
A simple (really simple) use case of the ebi-metagenomics-webkit
mag
Assembly and binning of metagenomes
MAG_Snakemake_wf
Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
MetaGOflow
This repository contains all CWL descriptions of the MGnify pipeline version 5.0 and their implementation for the Marine Genomic Observatories oriented pipeline, developed in the framework of an EOSC-Life funded project
microbetag
microbetag attempts to be a microbial interactions co-occurrence network annotator
nf-core-tools
Python package with helper tools for the nf-core community.
sorghum-bicolor-M81E-16S
Supplementary Material of the paper: The structure and the composition of the sweet sorghum (Sorghum bicolor) bacterial endophytic bacteriales community is affected by chemical N-fertilization in the field - NGS analysis scripts
streamflow
StreamFlow Workflow Manager