Michael Banf's repositories
METACLUSTER
R package for context-specific functionality analysis of metabolic gene clusters
NetworkModuleDetection
Highly scalable network clustering based on recursive jaccard similarity graph sparsification
superVision
Python implementation of Who supervises the supervisor? Model monitoring in production using deep feature embeddings with applications to workpiece inspection (https://arxiv.org/abs/2201.06599) to be presented at the 8th International Conference on Machine Vision and Machine Learning (MVML'22) (https://mvml.org)
BigData_Amazon_reviews_ETL_Cloud
Performing cloud-base ETL and analyzing data using SQL, Natural Language Processing (NLP) pipeline and Machine Learning model.
challenge-icml-2024
Official repository for the Topological Deep Learning Challenge 2024, organized by TAG-DS & PyT-Team and hosted by GRaM Workshop @ ICML 2024.
CNS_BindingPrediction
Using conserved non-coding sequences for robust transcription factor binding prediction
Fargate-MLflow-server
CDK deployment of MLflow on AWS Fargate to use with Amazon SageMaker.
PictureSensation
Auditory image understanding for the visually impaired
intervene
Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
lucid
A collection of infrastructure and tools for research in neural network interpretability.
ProbabilisticMetabolicGeneClusterHighConfidenceSetInference
Probabilistic metabolic gene cluster high confidence set inference
python_data_analysis
Python data repo, jupyter notebook, python scripts and data.
sequence-to-expression-inference
This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'
SHARP
SHARP: Single-cell RNA-seq Hyper-fast and Accurate processing via ensemble Random Projection
Xpresso
Predicting gene expression levels from genomic sequences