maxschelski

figureflow

Fast, modular and reproducible generation of publication quality scientific figures and movies with only a few lines of code.

pytorch-cluster-metrics

Pytorch implementation of standard metrics for clustering

cytostoch

Stochastic simulation (SSA) of cytoskeleton, implemented using CUDA JIT from numba for fast parallel processing on a GPU. Intended for microtubules in neurites, but is much more flexible.

livecellreg

Correlation-based registration of 2D & 3D live cell imaging movies in x, y and z axis.

maxschelski

neuritemt

Package to analyze microtubule orientation in neurons based on output of utrack/plustiptracker.

pyneurite

A computer vision package that traces and analyzes neurites in time-lapse videos fully automated.