maxrossi91

moni

MONI: A Pangenomic Index for Finding MEMs

pfp-data-structures

Prefix-Free Parsing data structures

pfp-cst

A compress suffix array built on prefix-free parsing.

dynamic-RMQ

Dynamic array supporting Range Minimum Queries

r-index

An optimal space run-length Burrows-Wheeler transform full-text index

pfp-thresholds

Computing thresholds from Prefix-free parsing

Big-BWT

modified from gitlab.com/manzai/Big-BWT to support fasta files

colored-strings-miner

Mine unique patterns in colored strings.

moni-align

A Read Aligner with Multi-Genome References

phantom-file-system

With this file system, you are able to navigate what is not physically reachable anymore (already detached mountable data storages)

ShapedSlp

SLP encodings that support substring extraction

2-SAT_to_reachibility

Solve a 2 SAT instance using the 2-coloring problem in Turingarena

academicons

An icon font for academics

AMR_expression_analysis

Differential expression exploratory analysis for AMR genes.

BT-CST

dynamic-b-tree-bit-vector

faster-minuter

Wavelet tree based on a fixed block boosting technique

levioSAM

Lift-over alignments from variant-aware references

leviosam2

Fast and accurate coordinate conversion between assemblies

max-card-bip-match_2_max-flow

maxrossi91-zsh-theme

My zsh theme

personal-website

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

pfp

pfp-cst_app_example

Mock example on how to use the PFP-CST

rlbwt2lcp

Compute minimum LCP value for each BWT equal-letter run

rlpbwt

Rmapper

Optical map assembly software

sdsl-lite

Succinct Data Structure Library 3.0 (unstable, prerelease)

Turingarena-problems-library

A collection of Turingarena problems.

vcf-bench

evaluating vcf parsing libraries