git clone https://github.com/maxlcummins/pipelord3.git
cd pipelord3
snakemake --use-conda
- Duplicate the yaml file at
config/default.yaml
and edit variables to your liking - Edit
workflow/Snakefile
at line 7, changingconfigfile: "config/default.yaml"
to instead include your new yaml file - Run snakemake with the --use-conda flag
snakemake --use-conda